Our team:
P. Duc Si Dong, Ph.D. (principle investigator) - Dr. Dong received his Bachelor of
Science degree in Biology from the University of California, Irvine, where he was an undergraduate
researcher in the labs of Dr. Walter M. Fitch and Dr. Susan V. Bryant, pioneers of molecular evolution
and limb regeneration, respectively. He earned his Ph.D. in Cell and Molecular Biology investigating
master control genes in appendage development at the University of Wisconsin, Madison in 2002. His
graduate studies resulted in four senior author articles, published in Development and in PNAS, helped
to resolve the mechanism of the famous Antennapedia mutation and was among the first to show that tissue
identity in an animal can be reprogrammed using a cocktail of genes. He did his postdoctoral research at
the University of California, San Francisco, where he was a JDRF Fellow and an L.L. Hillblom Fellow,
investigating development and diabetes in the laboratory of Dr. Didier Stainier. His postdoctoral work
yielded senior author publications in Nature Genetics and Genes & Development, where he demonstrated how
the zebrafish vertebrate model could be leveraged to uncover unique insight into organogenesis. In 2008,
Dr. Dong was recruited as an Assistant Professor to Sanford-Burnham Medical Research Institute to continue
his research in developmental genetics and disease. His lab has developed the first mutant zebrafish
monogenic diabetes model and Alagille Syndrome model, and is continuing to develop other disease models
that will be amendable for drug discovery. He is a recipient of the NIH Director’s New Innovator Award and
the W.M. Keck Foundation Award which fund the creation of new technologies to directly convert cells within
a living vertebrate to become replacement tissues, bypassing the need for stem cells. “My current goal is to
uncover fundamental insight into developmental genetics and to determine how gene function can be manipulated
to help cure diseases and advance regenerative medicine.”
K.G. Morse (Administrative Assistant) – I provide administrative support for members of the
Dong Lab with the goal of allowing them more time to focus on their science.
Joseph Lancman, Ph.D. (postdoc) – I earned my Ph.D. at the University of Wisconsin-Madison in
the laboratory of Dr. John Fallon where I studied patterning and morphogenesis of the vertebrate limb. This
experience solidified my interests and led me to pursue post-doctoral work that would allow me to explore how
developmental genes can impact human health and disease as well as the regenerative potential of vertebrates.
Since joining Dr. Dong’s laboratory, my studies helped us to discover the genes required for the specification
of progenitors that will go on to form the entire liver and pancreas system. My studies are now focused on the
mechanism of induced in vivo lineage conversion. Using this approach, I aim to generate replacement beta-cells,
the insulin producing cells lost in diabetics.
Keith Gates, Ph.D. (postdoc) – I received my Ph.D. in Neuroscience from Stony Brook University
where I studied the development of embryonic nervous system. My interest in organogenesis and regeneration led to
me to this lab. The development of the hepatopancreatic system is a complex process involving the precise
coordination of cell lineage specification, proliferation, migration, and differentiation. My research is
centered on how these events are determined through the interactions of signaling pathways and transcriptional
networks. I am currently focused on the mechanism of Jagged/Notch signaling in Alagille Sydrome biliary paucity
and regeneration. I am also using the fish vertebrate model as a platform investigate Alagille Syndrome disease
alleles and Jagged/Notch basic biology and downstream mechanisms.
Keith Gates, Ph.D. (postdoc) – I received my Ph.D. in Neuroscience from Stony Brook University
where I studied the development of embryonic nervous system. My interest in organogenesis and regeneration led to
me to this lab. The development of the hepatopancreatic system is a complex process involving the precise
coordination of cell lineage specification, proliferation, migration, and differentiation. My research is
centered on how these events are determined through the interactions of signaling pathways and transcriptional
networks. I am currently focused on the mechanism of Jagged/Notch signaling in Alagille Sydrome biliary paucity
and regeneration. I am also using the fish vertebrate model as a platform investigate Alagille Syndrome disease
alleles and Jagged/Notch basic biology and downstream mechanisms.
Jonaton Matalonga (postdoc) – I received my Ph.D in Biomedicine at the University of Barcelona,
Spain in Dr. Annabel Valledor ‘s lab where we unraveled a novel mechanism displayed by the specific nuclear receptor
Liver X Receptor that protects macrophages from intracellular invasive bacteria such as Salmonella Typhimurium. I
recently joined Dr. Dong’s lab to work on projects that would address new therapeutic approaches to human diseases.
My aims are to generate replacement cells by reprogramming cells in the body to directly adopt a new lineage identity.
Particularly, I am working to determine which types of cells/tissues can be directly lineage reprogrammed into endoderm
and further into beta cells. Further, I am translating our discoveries from fish to mammals, both in vitro and in vivo.
Sean Zeng (staff scientist) – I graduated from Vanderbilt University with a Ph.D. degree in the field of
Developmental Genetics and Cell Biology, and studied heart development as a postdoc at UCSD. I am interested in how
progenitor cells contribute to organ formation and growth during normal development and regeneration. Employing genetic,
transgenic, genome editing, and live imaging techniques in zebrafish, my research uses the cardiac and pancreatic lineages
a model system to answer questions regarding the mechanisms of development and disease. I am currently focused on
understanding how Jagged mutations contributes to Alagille Syndrome pathologies, including heart and vascular defects. Based
on our recent discoveries, we believe that it will be possible to reverse Alagille Syndrome defects,leading us to screen for
potential drugs to help cure this disease.
Michelle Edwards (CIRM intern) – I earned my Associates in Science - Biology Allied Health in 2015 and I’m
currently pursuing a Bachelor degree in Science – Biology Cal State San Marcos. During my training I became interested in
Regenerative Medicine and the development of new treatments against degenerative diseases. To further understand the mechanisms
involved, I joined the Dong Lab through the CIRM Bridges to Stem Cell Research Internship in which I am participating in
projects involved in cell reprogramming in the context of Diabetes.
Andrew Thomas (CIRM intern) – I received my Ph.D. in Developmental and Cell Biology from the University of
California Irvine in the lab of Dr. Steven Gross. I studied regulation of the motor protein kinesin by the signaling kinase CK2
both in vitro and in cells. I determined that kinesin inactivated over time due to a conformational change in the motor domain.
This inactivation and structural change was reversed by CK2 in a kinase-independent manner. I also expanded CK2 mediated motor
activation to other kinesin family members and implicated the interaction in cancer.
Since joining Dr. Dong’s lab, I am developing new reporter zebrafish lines to measure glucose levels and ROS in diabetic models
of zebrafish. In parallel, I am exploring different methods of regeneration to restore glucose homeostasis as alternative treatments
for diabetes – from regeneration of beta-cells to regrowth of a new pancreas.
Dani O’Rerio (Lab Fish) – I make genetic jujitsu possible in the lab.
Pinki N. d’Brane (Lab Mouse) – Keep calm and try to take over the world.
Alumni (partial list):
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Patrick Zeng (high school intern) – Princeton University
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Danhua Zhang (graduate student) – University of California, San Diego, postdoc
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Lillian Ng (UCSD undergraduate intern) – University of Pikeville Medical School
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Scarlet Lee (UCSD undergraduate intern) – UCLA MSN-Masters Nursing Program
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Alice Sun (UCSD undergraduate intern) – New England College of Optometry
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Lourd Kettoola (UCSD undergraduate intern) – University of Southern California Pharmacy School
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David Nguyen (UCSD masters intern) – SDSU/UCSD Doctoral Program in Audiology
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Zach Zixuan Shao (UCSD masters intern) – Caltech Bioengineering Graduate Program
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Stephanie Lees (UCSD undergraduate intern) – Quality Control Analyst at Baxter
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Sasha Hazelton (UCSD undergraduate intern) – UC Davis School of Veterinary Medicine
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Michael Nash (UCSC undergraduate intern) – University of Colorado Denver M.D./Ph.D. Program
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Nicole Lee (UCSD undergraduate intern) -- Columbia University Mechanical Engineering M.S./Ph.D. Program
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Dillon Cheung (UCSD undergraduate intern) – UC Irvine Medical School
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Zach Achen (SDSU CIRM undergraduate intern) – UCLA Medical School
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Michelle Mattson-Hoss (posdoctoral fellow) -- DiscoverX
Current collaborators:
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Anne Bang Lab (SBP) – Drug screening
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Mark Mercola Lab (Stanford University) – Stem cell / chemical biology
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Rolf Bodmer Lab (SBP) – heart development/disease
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Maike Sander Lab (UCSD) – Pancreas development in mouse and stem cells
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Pilar Ruiz-Lozano Lab (SBP) – Heart regeneration
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